HL_4V71_001

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CAGCUGGGAG

Length

10 nucleotides

Bulged bases

4V71|1|A1|C|16, 4V71|1|A1|U|17, 4V71|1|A1|G|18, 4V71|1|A1|G|19, 4V71|1|A1|G|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V71_001 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.14

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V71|1|A1|C|13
4V71|1|A1|A|14
4V71|1|A1|G|15
4V71|1|A1|C|16
4V71|1|A1|U|17
4V71|1|A1|G|18
4V71|1|A1|G|19
4V71|1|A1|G|20
4V71|1|A1|A|21
4V71|1|A1|G|22

Current chains

Chain A1

fMet-Val-tRNA-Val

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA