HL_4V71_093

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V71_093 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.369

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

4V71|1|BA|G|2303
4V71|1|BA|G|2304
4V71|1|BA|U|2305
4V71|1|BA|C|2306
4V71|1|BA|G|2307
4V71|1|BA|G|2308
4V71|1|BA|A|2309
4V71|1|BA|C|2310
4V71|1|BA|A|2311
4V71|1|BA|U|2312
4V71|1|BA|C|2313

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain BF

50S ribosomal protein L5