HL_4V72_054

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

CGCUUAGGCG

Length

10 nucleotides

Bulged bases

4V72|1|BA|G|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V72_054 not in the Motif Atlas

Geometric match to HL_5WWT_001

Geometric discrepancy: 0.2464

The information below is about HL_5WWT_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

4V72|1|BA|C|542
4V72|1|BA|G|543
4V72|1|BA|C|544
4V72|1|BA|U|545
4V72|1|BA|U|546
4V72|1|BA|A|547
4V72|1|BA|G|548
4V72|1|BA|G|549
4V72|1|BA|C|550
4V72|1|BA|G|551

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BR

50S ribosomal protein L21