HL_4V72_110

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GUUUAUUAAAAAC

Length

13 nucleotides

Bulged bases

4V72|1|BA|A|1780, 4V72|1|BA|U|1781, 4V72|1|BA|U|1782, 4V72|1|BA|A|1785, 4V72|1|BA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V72_110 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.3951

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60266.1

Basepair signature

cWW-cWW-tWH-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V72|1|BA|G|1776
4V72|1|BA|U|1777
4V72|1|BA|U|1778
4V72|1|BA|U|1779
4V72|1|BA|A|1780
4V72|1|BA|U|1781
4V72|1|BA|U|1782
4V72|1|BA|A|1783
4V72|1|BA|A|1784
4V72|1|BA|A|1785
4V72|1|BA|A|1786
4V72|1|BA|A|1787
4V72|1|BA|C|1788

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2