HL_4V73_113

3D structure

PDB id

4V73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

ACCCCAUGCCGAACU

Length

15 nucleotides

Bulged bases

4V73|1|BB|C|35, 4V73|1|BB|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V73_113 not in the Motif Atlas

Homologous match to HL_8C3A_228

Geometric discrepancy: 0.3049

The information below is about HL_8C3A_228

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50688.1

Basepair signature

cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V73|1|BB|A|34
4V73|1|BB|C|35
4V73|1|BB|C|36
4V73|1|BB|C|37
4V73|1|BB|C|38
4V73|1|BB|A|39
4V73|1|BB|U|40
4V73|1|BB|G|41
4V73|1|BB|C|42
4V73|1|BB|C|43
4V73|1|BB|G|44
4V73|1|BB|A|45
4V73|1|BB|A|46
4V73|1|BB|C|47
4V73|1|BB|U|48

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5

Chain BO

50S ribosomal protein L18