HL_4V77_035

3D structure

PDB id

4V77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V77_035 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.3774

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V77|1|AA|C|1314
4V77|1|AA|U|1315
4V77|1|AA|G|1316
4V77|1|AA|C|1317
4V77|1|AA|A|1318
4V77|1|AA|A|1319
4V77|1|AA|C|1320
4V77|1|AA|U|1321
4V77|1|AA|C|1322
4V77|1|AA|G|1323

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AN

30S ribosomal protein S14

Chain AS

30S ribosomal protein S19