HL_4V78_055

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

4V78|1|BA|A|574

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V78_055 not in the Motif Atlas

Geometric match to HL_4WF9_018

Geometric discrepancy: 0.2435

The information below is about HL_4WF9_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4V78|1|BA|U|566
4V78|1|BA|U|567
4V78|1|BA|U|568
4V78|1|BA|U|569
4V78|1|BA|G|570
4V78|1|BA|U|571
4V78|1|BA|A|572
4V78|1|BA|U|573
4V78|1|BA|A|574
4V78|1|BA|A|575

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BL

50S ribosomal protein L15

Chain BR

50S ribosomal protein L21