HL_4V79_049

3D structure

PDB id

4V79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V79|1|BA|G|329, 4V79|1|BA|A|330, 4V79|1|BA|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V79_049 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.2175

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V79|1|BA|G|327
4V79|1|BA|U|328
4V79|1|BA|G|329
4V79|1|BA|A|330
4V79|1|BA|C|331
4V79|1|BA|A|332
4V79|1|BA|G|333
4V79|1|BA|C|334
4V79|1|BA|C|335

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24