HL_4V7B_049

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V7B|1|BA|G|329, 4V7B|1|BA|A|330, 4V7B|1|BA|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7B_049 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0988

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V7B|1|BA|G|327
4V7B|1|BA|U|328
4V7B|1|BA|G|329
4V7B|1|BA|A|330
4V7B|1|BA|C|331
4V7B|1|BA|A|332
4V7B|1|BA|G|333
4V7B|1|BA|C|334
4V7B|1|BA|C|335

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24