HL_4V7B_078

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V7B|1|BA|A|1614, 4V7B|1|BA|A|1616, 4V7B|1|BA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7B_078 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1197

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V7B|1|BA|C|1612
4V7B|1|BA|G|1613
4V7B|1|BA|A|1614
4V7B|1|BA|C|1615
4V7B|1|BA|A|1616
4V7B|1|BA|C|1617
4V7B|1|BA|A|1618
4V7B|1|BA|G|1619

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BS

50S ribosomal protein L22