HL_4V7B_099

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

4V7B|1|BA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7B_099 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1219

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

4V7B|1|BA|U|2528
4V7B|1|BA|G|2529
4V7B|1|BA|A|2530
4V7B|1|BA|A|2531
4V7B|1|BA|G|2532
4V7B|1|BA|U|2533
4V7B|1|BA|A|2534
4V7B|1|BA|G|2535

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AY

Elongation Factor G

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6