3D structure

PDB id
4V7C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.6 Å

Loop

Sequence
GGUAACGGC
Length
9 nucleotides
Bulged bases
4V7C|1|AA|G|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7C_006 not in the Motif Atlas
Homologous match to HL_5J7L_006
Geometric discrepancy: 0.1801
The information below is about HL_5J7L_006
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_84299.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

4V7C|1|AA|G|259
4V7C|1|AA|G|260
4V7C|1|AA|U|261
4V7C|1|AA|A|262
4V7C|1|AA|A|263
4V7C|1|AA|C|264
4V7C|1|AA|G|265
4V7C|1|AA|G|266
4V7C|1|AA|C|267

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AQ
30S ribosomal protein S17
Chain AT
30S ribosomal protein S20

Coloring options:


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