3D structure

PDB id
4V7C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.6 Å

Loop

Sequence
GAUGCAACGC
Length
10 nucleotides
Bulged bases
4V7C|1|AA|G|971
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7C_021 not in the Motif Atlas
Homologous match to HL_5J7L_021
Geometric discrepancy: 0.1507
The information below is about HL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V7C|1|AA|G|963
4V7C|1|AA|A|964
4V7C|1|AA|U|965
4V7C|1|AA|G|966
4V7C|1|AA|C|967
4V7C|1|AA|A|968
4V7C|1|AA|A|969
4V7C|1|AA|C|970
4V7C|1|AA|G|971
4V7C|1|AA|C|972

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AM
30S ribosomal protein S13
Chain AV
Transfer RNA; tRNA
Chain AW
Transfer RNA; tRNA

Coloring options:


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