HL_4V7C_049

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V7C|1|BA|G|329, 4V7C|1|BA|A|330, 4V7C|1|BA|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7C_049 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1704

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V7C|1|BA|G|327
4V7C|1|BA|U|328
4V7C|1|BA|G|329
4V7C|1|BA|A|330
4V7C|1|BA|C|331
4V7C|1|BA|A|332
4V7C|1|BA|G|333
4V7C|1|BA|C|334
4V7C|1|BA|C|335

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BW

50S ribosomal protein L24