HL_4V7D_077

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

4V7D|1|BA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7D_077 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1725

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V7D|1|BA|G|259
4V7D|1|BA|G|260
4V7D|1|BA|U|261
4V7D|1|BA|A|262
4V7D|1|BA|A|263
4V7D|1|BA|C|264
4V7D|1|BA|G|265
4V7D|1|BA|G|266
4V7D|1|BA|C|267

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BQ

30S ribosomal protein S17

Chain BT

30S ribosomal protein S20