HL_4V7D_119

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7D_119 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.2036

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4V7D|1|AA|U|2324
4V7D|1|AA|G|2325
4V7D|1|AA|C|2326
4V7D|1|AA|A|2327
4V7D|1|AA|A|2328
4V7D|1|AA|U|2329
4V7D|1|AA|G|2330
4V7D|1|AA|G|2331

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AG

50S ribosomal protein L5

Chain AP

50S ribosomal protein L16

Chain AZ

50S ribosomal protein L27