HL_4V7E_001
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 4V7E|1|Aa|A|39
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7E_001 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.1434
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
4V7E|1|Aa|U|37
4V7E|1|Aa|A|38
4V7E|1|Aa|A|39
4V7E|1|Aa|G|40
4V7E|1|Aa|C|41
4V7E|1|Aa|A|42
4V7E|1|Aa|U|43
4V7E|1|Aa|A|44
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CL
- 60S ribosomal protein L13E
- Chain CN
- 60S ribosomal protein L15E
- Chain Ca
- 60S ribosomal protein L15
- Chain Co
- 60S ribosomal protein L44E
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