HL_4V7E_007

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

4V7E|1|Aa|G|216, 4V7E|1|Aa|A|217, 4V7E|1|Aa|G|218

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1261

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

4V7E|1|Aa|G|214
4V7E|1|Aa|U|215
4V7E|1|Aa|G|216
4V7E|1|Aa|A|217
4V7E|1|Aa|G|218
4V7E|1|Aa|A|219
4V7E|1|Aa|G|220
4V7E|1|Aa|C|221
4V7E|1|Aa|C|222

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ac

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

60S ribosomal protein L4

Chain CY

60S ribosomal protein L24