HL_4V7E_016

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

4V7E|1|Aa|C|652

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_016 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.237

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V7E|1|Aa|U|644
4V7E|1|Aa|C|645
4V7E|1|Aa|U|646
4V7E|1|Aa|U|647
4V7E|1|Aa|G|648
4V7E|1|Aa|A|649
4V7E|1|Aa|A|650
4V7E|1|Aa|A|651
4V7E|1|Aa|C|652
4V7E|1|Aa|A|653

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain Ca

60S ribosomal protein L15

Chain Ce

60S ribosomal protein L32E