HL_4V7E_023

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

4V7E|1|Aa|A|916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_023 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1597

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7E|1|Aa|G|913
4V7E|1|Aa|C|914
4V7E|1|Aa|G|915
4V7E|1|Aa|A|916
4V7E|1|Aa|A|917
4V7E|1|Aa|A|918
4V7E|1|Aa|G|919
4V7E|1|Aa|A|920
4V7E|1|Aa|C|921

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L2

Chain Cj

60S ribosomal protein L37E