HL_4V7E_024

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

4V7E|1|Aa|C|962, 4V7E|1|Aa|A|965

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_024 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.1717

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V7E|1|Aa|C|961
4V7E|1|Aa|C|962
4V7E|1|Aa|U|963
4V7E|1|Aa|C|964
4V7E|1|Aa|A|965
4V7E|1|Aa|G|966

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L21E

Chain Ca

60S ribosomal protein L15

Chain Cb

60S ribosomal protein L29E

Chain Co

60S ribosomal protein L44E