HL_4V7E_026

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUUCGGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_026 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.3908

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V7E|1|Aa|C|1080
4V7E|1|Aa|U|1081
4V7E|1|Aa|U|1082
4V7E|1|Aa|C|1083
4V7E|1|Aa|G|1084
4V7E|1|Aa|G|1085
4V7E|1|Aa|U|1086
4V7E|1|Aa|G|1087

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L18

Chain CT

60S ribosomal protein L21E

Chain Cb

60S ribosomal protein L29E