HL_4V7E_028
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7E_028 not in the Motif Atlas
- Homologous match to HL_8C3A_026
- Geometric discrepancy: 0.1539
- The information below is about HL_8C3A_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V7E|1|Aa|G|1151
4V7E|1|Aa|G|1152
4V7E|1|Aa|A|1153
4V7E|1|Aa|U|1154
4V7E|1|Aa|G|1155
4V7E|1|Aa|A|1156
4V7E|1|Aa|A|1157
4V7E|1|Aa|C|1158
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ab
- 5S ribosomal RNA; 5S rRNA
- Chain CF
- 60S ribosomal protein L30
- Chain Ce
- 60S ribosomal protein L32E
- Chain Cf
- 60S ribosomal protein L33E
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