HL_4V7E_029

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

4V7E|1|Aa|A|1249

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_029 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1307

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V7E|1|Aa|C|1243
4V7E|1|Aa|A|1244
4V7E|1|Aa|U|1245
4V7E|1|Aa|G|1246
4V7E|1|Aa|G|1247
4V7E|1|Aa|A|1248
4V7E|1|Aa|A|1249
4V7E|1|Aa|G|1250
4V7E|1|Aa|U|1251
4V7E|1|Aa|C|1252
4V7E|1|Aa|G|1253

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L11

Chain Cq

60S acidic ribosomal protein P0