HL_4V7E_030

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

4V7E|1|Aa|A|1267, 4V7E|1|Aa|A|1274

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_030 not in the Motif Atlas

Geometric match to HL_5TBW_227

Geometric discrepancy: 0.3805

The information below is about HL_5TBW_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02373.2

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V7E|1|Aa|G|1266
4V7E|1|Aa|A|1267
4V7E|1|Aa|G|1268
4V7E|1|Aa|U|1269
4V7E|1|Aa|G|1270
4V7E|1|Aa|U|1271
4V7E|1|Aa|G|1272
4V7E|1|Aa|U|1273
4V7E|1|Aa|A|1274
4V7E|1|Aa|A|1275
4V7E|1|Aa|C|1276
4V7E|1|Aa|A|1277
4V7E|1|Aa|A|1278
4V7E|1|Aa|C|1279
4V7E|1|Aa|U|1280
4V7E|1|Aa|C|1281

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L11

Chain Cm

60S ribosomal protein L40E

Chain Cq

60S acidic ribosomal protein P0