HL_4V7E_035

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGUAACCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_035 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3443

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V7E|1|Aa|G|1546
4V7E|1|Aa|G|1547
4V7E|1|Aa|U|1548
4V7E|1|Aa|A|1549
4V7E|1|Aa|A|1550
4V7E|1|Aa|C|1551
4V7E|1|Aa|C|1552
4V7E|1|Aa|C|1553

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L8E

Chain CN

60S ribosomal protein L15E

Chain Cj

60S ribosomal protein L37E