HL_4V7E_040

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUUCAGC

Length

7 nucleotides

Bulged bases

4V7E|1|Aa|C|1720

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_040 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.5185

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V7E|1|Aa|G|1717
4V7E|1|Aa|U|1718
4V7E|1|Aa|U|1719
4V7E|1|Aa|C|1720
4V7E|1|Aa|A|1721
4V7E|1|Aa|G|1722
4V7E|1|Aa|C|1723

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CR

60S ribosomal protein L19E

Chain Cc

60S ribosomal protein L30E

Chain Cp

60S ribosomal protein L43E