HL_4V7E_046

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4V7E|1|Aa|C|2061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_046 not in the Motif Atlas

Geometric match to HL_4LFB_002

Geometric discrepancy: 0.3286

The information below is about HL_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V7E|1|Aa|C|2060
4V7E|1|Aa|C|2061
4V7E|1|Aa|U|2062
4V7E|1|Aa|U|2063
4V7E|1|Aa|C|2064
4V7E|1|Aa|G|2065
4V7E|1|Aa|G|2066
4V7E|1|Aa|G|2067

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CU

60S ribosomal protein L22E