HL_4V7E_060

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UCCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_060 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.2758

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V7E|1|Aa|U|2727
4V7E|1|Aa|C|2728
4V7E|1|Aa|C|2729
4V7E|1|Aa|A|2730
4V7E|1|Aa|G|2731
4V7E|1|Aa|U|2732
4V7E|1|Aa|A|2733
4V7E|1|Aa|C|2734
4V7E|1|Aa|G|2735

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CQ

60S ribosomal protein L18E

Chain CT

60S ribosomal protein L21E

Chain Ca

60S ribosomal protein L15

Chain Cb

60S ribosomal protein L29E

Chain Co

60S ribosomal protein L44E