HL_4V7E_062

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGGAGUUUG

Length

9 nucleotides

Bulged bases

4V7E|1|Aa|G|2779

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_062 not in the Motif Atlas

Homologous match to HL_5TBW_060

Geometric discrepancy: 0.135

The information below is about HL_5TBW_060

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

4V7E|1|Aa|C|2778
4V7E|1|Aa|G|2779
4V7E|1|Aa|G|2780
4V7E|1|Aa|A|2781
4V7E|1|Aa|G|2782
4V7E|1|Aa|U|2783
4V7E|1|Aa|U|2784
4V7E|1|Aa|U|2785
4V7E|1|Aa|G|2786

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L13E

Chain Ca

60S ribosomal protein L15

Chain Co

60S ribosomal protein L44E