HL_4V7E_071

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCGAAGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_071 not in the Motif Atlas

Homologous match to HL_8C3A_070

Geometric discrepancy: 0.4407

The information below is about HL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V7E|1|Aa|C|3232
4V7E|1|Aa|C|3233
4V7E|1|Aa|G|3234
4V7E|1|Aa|A|3235
4V7E|1|Aa|A|3236
4V7E|1|Aa|G|3237
4V7E|1|Aa|U|3238
4V7E|1|Aa|G|3239

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CO

60S ribosomal protein L13