HL_4V7E_078

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAAGUUG

Length

7 nucleotides

Bulged bases

4V7E|1|Ac|G|111, 4V7E|1|Ac|U|113

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_078 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.1666

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V7E|1|Ac|C|108
4V7E|1|Ac|A|109
4V7E|1|Ac|A|110
4V7E|1|Ac|G|111
4V7E|1|Ac|U|112
4V7E|1|Ac|U|113
4V7E|1|Ac|G|114

Current chains

Chain Ac

5.8S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain CX

60S ribosomal protein L23

Chain Cj

60S ribosomal protein L37E

Chain Cl

60S ribosomal protein L39E