HL_4V7E_082

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

4V7E|1|Ad|U|157

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_082 not in the Motif Atlas

Geometric match to HL_5J7L_191

Geometric discrepancy: 0.2295

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V7E|1|Ad|G|152
4V7E|1|Ad|U|153
4V7E|1|Ad|A|154
4V7E|1|Ad|A|155
4V7E|1|Ad|U|156
4V7E|1|Ad|U|157
4V7E|1|Ad|C|158

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BG

40S ribosomal protein S6

Chain BY

40S ribosomal protein S24E