HL_4V7E_088

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

4V7E|1|Ad|A|404, 4V7E|1|Ad|G|407

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_088 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.1762

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V7E|1|Ad|C|397
4V7E|1|Ad|C|398
4V7E|1|Ad|U|399
4V7E|1|Ad|G|400
4V7E|1|Ad|A|401
4V7E|1|Ad|G|402
4V7E|1|Ad|A|403
4V7E|1|Ad|A|404
4V7E|1|Ad|A|405
4V7E|1|Ad|C|406
4V7E|1|Ad|G|407
4V7E|1|Ad|G|408

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BG

40S ribosomal protein S6

Chain BY

40S ribosomal protein S24E