HL_4V7E_098
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7E_098 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.2882
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
4V7E|1|Ad|A|905
4V7E|1|Ad|G|906
4V7E|1|Ad|G|907
4V7E|1|Ad|U|908
4V7E|1|Ad|G|909
4V7E|1|Ad|A|910
4V7E|1|Ad|A|911
4V7E|1|Ad|A|912
4V7E|1|Ad|U|913
4V7E|1|Ad|U|914
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain Af
- 5'-R(*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3'
- Chain BF
- 40S ribosomal protein S7
- Chain BO
- 40S ribosomal protein S11
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