HL_4V7E_101

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGCUUAUAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_101 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.5898

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61768.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V7E|1|Ad|U|1060
4V7E|1|Ad|G|1061
4V7E|1|Ad|C|1062
4V7E|1|Ad|U|1063
4V7E|1|Ad|U|1064
4V7E|1|Ad|A|1065
4V7E|1|Ad|U|1066
4V7E|1|Ad|A|1067
4V7E|1|Ad|G|1068
4V7E|1|Ad|G|1069

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S1E

Chain Bb

40S ribosomal protein S27E