HL_4V7E_102

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_102 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.1481

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7E|1|Ad|A|1089
4V7E|1|Ad|G|1090
4V7E|1|Ad|A|1091
4V7E|1|Ad|A|1092
4V7E|1|Ad|A|1093
4V7E|1|Ad|U|1094

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BC

40S ribosomal protein S5

Chain BW

40S ribosomal protein S8

Chain Ba

40S ribosomal protein S26E