HL_4V7E_111
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AUUGCAAUUGUU
- Length
- 12 nucleotides
- Bulged bases
- 4V7E|1|Ad|U|1566, 4V7E|1|Ad|G|1567
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V7E_111 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.1991
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V7E|1|Ad|A|1558
4V7E|1|Ad|U|1559
4V7E|1|Ad|U|1560
4V7E|1|Ad|G|1561
4V7E|1|Ad|C|1562
4V7E|1|Ad|A|1563
4V7E|1|Ad|A|1564
4V7E|1|Ad|U|1565
4V7E|1|Ad|U|1566
4V7E|1|Ad|G|1567
4V7E|1|Ad|U|1568
4V7E|1|Ad|U|1569
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BP
- 40S ribosomal protein S19
- Chain BS
- 40S ribosomal protein S13
- Chain BT
- 40S ribosomal protein S19E
- Chain Bd
- 40S ribosomal protein S14
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