HL_4V7E_116

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUUGUCGCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_116 not in the Motif Atlas

Homologous match to HL_6UFM_002

Geometric discrepancy: 0.2089

The information below is about HL_6UFM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

42

Unit IDs

4V7E|1|Ae|C|31
4V7E|1|Ae|U|32
4V7E|1|Ae|U|33
4V7E|1|Ae|G|34
4V7E|1|Ae|U|35
4V7E|1|Ae|C|36
4V7E|1|Ae|G|37
4V7E|1|Ae|C|38
4V7E|1|Ae|G|39

Current chains

Chain Ae

P-site tRNA

Nearby chains

Chain Ad

Small subunit ribosomal RNA; SSU rRNA

Chain Af

5'-R(*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3'