HL_4V7E_119

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGCACUU

Length

7 nucleotides

Bulged bases

4V7E|1|Aa|G|1510, 4V7E|1|Aa|U|1514

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_119 not in the Motif Atlas

Homologous match to HL_8P9A_144

Geometric discrepancy: 0.2207

The information below is about HL_8P9A_144

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

4V7E|1|Aa|G|1509
4V7E|1|Aa|G|1510
4V7E|1|Aa|C|1511
4V7E|1|Aa|A|1512
4V7E|1|Aa|C|1513
4V7E|1|Aa|U|1514
4V7E|1|Aa|U|1515

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CP

60S ribosomal protein L22

Chain CR

60S ribosomal protein L19E

Chain Cl

60S ribosomal protein L39E