HL_4V7E_121

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUACCG

Length

6 nucleotides

Bulged bases

4V7E|1|Aa|A|2574

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_121 not in the Motif Atlas

Homologous match to HL_8C3A_054

Geometric discrepancy: 0.4539

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V7E|1|Aa|U|2572
4V7E|1|Aa|U|2573
4V7E|1|Aa|A|2574
4V7E|1|Aa|C|2575
4V7E|1|Aa|C|2576
4V7E|1|Aa|G|2577

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CZ

60S ribosomal protein L27E