HL_4V7E_130

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCCGGGU

Length

7 nucleotides

Bulged bases

4V7E|1|Ad|G|730, 4V7E|1|Ad|G|732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_130 not in the Motif Atlas

Geometric match to HL_6D12_001

Geometric discrepancy: 0.1954

The information below is about HL_6D12_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V7E|1|Ad|G|727
4V7E|1|Ad|C|728
4V7E|1|Ad|C|729
4V7E|1|Ad|G|730
4V7E|1|Ad|G|731
4V7E|1|Ad|G|732
4V7E|1|Ad|U|733

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains