HL_4V7E_131

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UAUUGUGUUGGCCUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7E_131 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.581

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V7E|1|Ad|U|833
4V7E|1|Ad|A|834
4V7E|1|Ad|U|835
4V7E|1|Ad|U|836
4V7E|1|Ad|G|837
4V7E|1|Ad|U|838
4V7E|1|Ad|G|839
4V7E|1|Ad|U|840
4V7E|1|Ad|U|841
4V7E|1|Ad|G|842
4V7E|1|Ad|G|843
4V7E|1|Ad|C|844
4V7E|1|Ad|C|845
4V7E|1|Ad|U|846
4V7E|1|Ad|U|847
4V7E|1|Ad|C|848
4V7E|1|Ad|G|849

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BG

40S ribosomal protein S6