HL_4V7I_003

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

4V7I|1|A8|C|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_003 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.3741

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4V7I|1|A8|U|59
4V7I|1|A8|G|60
4V7I|1|A8|C|61
4V7I|1|A8|U|62
4V7I|1|A8|A|63
4V7I|1|A8|A|64
4V7I|1|A8|U|65
4V7I|1|A8|C|66
4V7I|1|A8|U|67
4V7I|1|A8|G|68

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AA

PREPROTEIN TRANSLOCASE SECY SUBUNIT

Chain AT

50S ribosomal protein L23

Chain AY

50S ribosomal protein L29