HL_4V7I_010

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_010 not in the Motif Atlas

Homologous match to HL_7A0S_008

Geometric discrepancy: 0.2478

The information below is about HL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

4V7I|1|A8|C|246
4V7I|1|A8|G|247
4V7I|1|A8|G|248
4V7I|1|A8|C|249
4V7I|1|A8|G|250
4V7I|1|A8|A|251
4V7I|1|A8|G|252

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L35

Chain AL

50S ribosomal protein L15