HL_4V7I_014

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

4V7I|1|A8|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_014 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.3932

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V7I|1|A8|G|381
4V7I|1|A8|A|382
4V7I|1|A8|C|383
4V7I|1|A8|A|384
4V7I|1|A8|C|385
4V7I|1|A8|G|386
4V7I|1|A8|U|387
4V7I|1|A8|G|388
4V7I|1|A8|G|389
4V7I|1|A8|U|390
4V7I|1|A8|A|391
4V7I|1|A8|U|392
4V7I|1|A8|C|393

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L35

Chain AX

50S ribosomal protein L28