HL_4V7I_022

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_022 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.4841

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V7I|1|A8|U|641
4V7I|1|A8|U|642
4V7I|1|A8|A|643
4V7I|1|A8|A|644
4V7I|1|A8|C|645
4V7I|1|A8|U|646
4V7I|1|A8|G|647

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L33

Chain A3

50S ribosomal protein L35