HL_4V7I_031

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_031 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.3996

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V7I|1|A8|C|1092
4V7I|1|A8|G|1093
4V7I|1|A8|U|1094
4V7I|1|A8|A|1095
4V7I|1|A8|A|1096
4V7I|1|A8|U|1097
4V7I|1|A8|A|1098
4V7I|1|A8|G|1099

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L36

Chain AI

50S ribosomal protein L11