HL_4V7I_048

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_048 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.3883

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4V7I|1|A8|C|1806
4V7I|1|A8|G|1807
4V7I|1|A8|A|1808
4V7I|1|A8|A|1809
4V7I|1|A8|A|1810
4V7I|1|A8|G|1811

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A6

50S ribosomal protein L2

Chain AX

50S ribosomal protein L28