HL_4V7I_061

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7I_061 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.2395

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V7I|1|A8|U|2404
4V7I|1|A8|G|2405
4V7I|1|A8|A|2406
4V7I|1|A8|A|2407
4V7I|1|A8|U|2408
4V7I|1|A8|G|2409
4V7I|1|A8|G|2410
4V7I|1|A8|A|2411
4V7I|1|A8|A|2412
4V7I|1|A8|G|2413

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L15